In summary

  • Pathogen levels on fresh produce surfaces typically decline after irrigation due to environmental stressors such as UV light and desiccation, but this decline is variable and influenced by crop and climatic conditions and sunlight exposure.
  • Injured plant tissue, particularly on leafy greens like lettuce and spinach, can prolong pathogen survival by releasing nutrients that support microbial growth.
  • Some bacteria may internalise into plant tissues or form biofilms on surfaces, making them more resistant to environmental stresses and harder to detect.
  • Adaptation to environmental stressors may increase bacterial persistence and UV resistance over time, and some pathogens may enter a viable but non-culturable (VBNC) state, complicating detection.
  • Pathogen die-off is affected by weather, contamination level, and plant-microbe interactions; it should not be relied upon as a control measure – preventive actions, especially the use of microbiologically safe water, are essential.

Human pathogens present on fresh produce are a key concern in food safety. Understanding the fate of pathogens on plant surfaces (phylloplanes) is critical in estimating the likelihood of contaminated produce entering the supply chain.

Pathogen Decline on Phylloplanes

The phylloplane is a relatively hostile environment for most microorganisms. Factors such as drying, ultraviolet (UV) radiation, and nutrient scarcity contribute to a rapid decline in pathogen numbers after water application. Hutchison and co-workers investigated the decline of Escherichia coli O157, Campylobacter, and Salmonella following irrigation of lettuce and spinach in UK fields (1). They reported a consistent rapid initial drop in bacterial counts within the first week, particularly under high sunlight conditions, with levels typically falling below detection within two weeks. Barker-Reid and colleagues in Australia found a similar pattern, observing a 2-log reduction in E. coli on uninjured iceberg lettuce within five days2. However, they also demonstrated that injured leaves leaking nutrients supported longer bacterial survival, underscoring the importance of good crop condition.

A study examining zoonotic pathogen (a pathogen that can spread from animals to humans) survival on spinach and lettuce irrigated with water contaminated with E. coli O157, Salmonella Typhimurium, Campylobacter jejuni, and Listeria monocytogenes showed that higher levels of initial contamination were associated with longer survival (3). Across multiple growing seasons and replicates, pathogens typically became undetectable within one month, with sunlight intensity again strongly influencing the rate of decline.

Despite the evidence for rapid initial die-off, longer-term persistence has also been documented. One field study reported survival of non-toxigenic E. coli for up to 177 days under low-light winter conditions in Georgia, USA (4). A summary of related, relevant research is provided in Table 1 below.

Table 1: A Summary of Bacterial Survival on Plant Surfaces (Modified from Delaquis et al. (5))

InvestigatorProduce TypeBacteria usedExperimental DetailsExperimental Outcomes
Solomon et al. (6)Butterhead lettuce, cv. Tom ThumbATCC 43895Greenhouse setting, 30-day-old plants, contaminanted by sprayRecovery from blended leaf tissue samples for up to 30 days following inoculation
Solomon et al. (6)Green ice lettuce, unspecified cultivarATCC 43895Greenhouse setting, contaminated dairy manure, irrigation water, plants grown from seedlingsTransfer to external leaf surfaces and internalisation demonstrated by cultural procedures and microscopy
Wachtel and Charkowski (7)Lettuce, cv. PrizeheadFour E. coli O157:H7Laboratory setting hydroponic system, soil, contamination through irrigation water, plants grown from seedlingsStrong association with the root system shown by cultural techniques and fluorescence microscopy
Islam et al. (4)Lettuce, parsley, unspecified cultivarNon-toxigenic B6-914Field setting contaminated dairy-poultry manure compost, irrigation water, plants grown from seedlingsDetection on tissues from both plant species by a rinse method and culturing for up to 177 days
Franz et al. (8)Lettuce, cv. TamburoNon-toxigenic B6-914Laboratory setting, hydroponic systems, contaminated potting soil, grown from seed or seedlingsInternalisation indicated by recovery from the surface-sterilised, ground tissue samples
Cooley et al. (9)Lettuce, unspecified cultivarE. coli O157:H7 OdwallaLaboratory setting contaminated seeds or seedlings contaminated with cell suspensions, co-contaminated with two epiphytic bacteria 
Macarisin et al. (10)Spinach, Emilia, Lazion, Space, and WaitikiE. coli O157:H7 EDL933Phytotron in contaminant level two laboratoryAt least 14 days (when the experiment was terminated). Lead roughness is positively associated with numbers of E. coli that can attach to leaves.

The key finding from the studies in the above table is that pathogens introduced to an environment with an established microbial community are less likely to persist, though internalisation into plant tissues may extend survival. Such internalised bacteria are protected from surface stresses and can persist longer, though typically at low levels. Internalisation has been demonstrated in lettuce and spinach, with some bacteria associating with root systems or being detected inside surface-sterilised tissues (11).

Pathogen persistence is also influenced by structural and behavioural microbial adaptations. Biofilm formation provides a protective layer that helps shield bacteria from environmental stresses, including UV radiation. Between 30% and 80% of leaf surface bacteria are estimated to exist within biofilms, particularly in nutrient-rich areas like leaf veins. These structures have been shown to develop within two days on cotyledons, hypocotyls, and roots of various sprouts (12-14). Some foodborne pathogens, including Shiga toxin-producing E. coli (STEC), have shown increased survival in the rhizosphere compared to leaves, likely due to reduced exposure to damaging sunlight (15).

Bacteria are dynamic and adapt quickly to environmental pressures. Studies have shown that bacterial populations on plant surfaces become more UV-resistant as the growing season progresses. Adaptation to plant surfaces may also influence virulence, although further work is needed to understand this relationship fully (16, 17). Further, apparent die-off may not always reflect cell death. Bacteria may instead enter a viable but non-culturable (VBNC) state, rendering them undetectable by conventional microbiological methods. While not confirmed to contribute to human illness, the potential for resuscitation under favourable conditions, such as those in the mammalian gut, remains a concern.

The role of weather in bacterial decline

Environmental factors, particularly weather, play a significant role in pathogen survival on crops. A recent study evaluating bacterial decline on spinach irrigated with either untreated surface water or chlorine dioxide-treated water found that total mesophilic populations were not significantly affected by disinfection, although reductions were observed in Enterobacteriaceae and Pseudomonas (18). 

Another large field study across California, New York, and Spain tested how E. coli and Salmonella survived on spinach and lettuce, assessing the US Food Safety Modernisation Act’s assumption of a 0.5 log reduction per day (19). Results indicated that bacterial decline varied with weather, sometimes following a linear trend and sometimes occurring in two phases: a rapid initial drop followed by a slower phase. Low humidity conditions led to a faster transition into this slower phase. The researchers concluded that the FSMA’s assumptions may oversimplify complex environmental interactions and recommended incorporating weather data into risk assessments.

Conclusion

Taken together, these findings highlight that while postharvest declines in microbial contamination do occur, they cannot be relied upon as the sole or primary control measure. The variability introduced by crop type, weather, microbial adaptations, and plant condition means that pathogen presence at harvest remains a possibility, even after extended water intervals. For growers, this reinforces the importance of using microbiologically safe water throughout the production cycle, including the period before harvest. Preventive approaches, rather than reactive waiting periods, remain the cornerstone of food safety in fresh produce systems.

References:

  1. Hutchison, M. L., Walters, L. D., Moore, A., Crookes, K. M., & Avery, S. M. (2004). Effect of length of time before incorporation on survival of pathogenic bacteria present in livestock wastes applied to agricultural soil. Applied and Environmental Microbiology, 70(9), 5111-5118

  2. Barker-Reid, F., Harapas, D., Engleitner, S., Kreidl, S., Holmes, R. and Faggian, R. (2009) Persistence of Escherichia coli on injured iceberg lettuce in the field, overhead Irrigated with contaminated water. Journal of Food Protection 72:458-464

  3. Islam, M., M. P. Doyle, S. C. Phatak, P. Millner, and X. Jiang. 2004. Persistence of enterohemorrhagic Escherichia coli O157:H7 in soil and on leaf lettuce and parsley grown in fields treated with contaminated manure composts or irrigation water. Journal of Food Protection 67:1365– 1370

  4. Delaquis, P., Bach, S. and Dinu, L.D. (2007) Behaviour of Escherichia coli O157:H7 in leafy vegetables. Journal of Food Protection 70:1966-1974

  5. Solomon, E. B., S. Yaron, and K. R. Matthews. 2002. Effect of irrigation method on transmission and persistence of Escherichia coli O157:H7 on lettuce. Journal of Food Protection 66:2198–2202

  6. Wachtel, M. R., and A. O. Charkowski. 2002. Cross-contamination of lettuce with E. coli O157:H7. Journal of Food Protection 65:465–470

  7. Franz, E., A. D. van Diepeningen, O. J. de Vos, and A. H. C. van Bruggen. 2005. Effects of cattle feeding regimen and soil management type on the fate of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in manure, manure amended soil and lettuce. Applied and Environmental Microbiology 71:6165–6174

  8. Cooley, M. B., D. Chao, and R. E. Mandrell. 2006. Escherichia coli O157:H7 survival and growth on lettuce is altered by the presence of epiphytic bacteria. Journal of Food Protection 69:2329–2335

  9. Macarisin, D., Patel, J., Bauchan, G., Giron, J.A. and Ravishankar, S. (2013) Effect of spinach cultivar and bacterial adherence factors on survival of Escherichia coli O157:H7 on spinach leaves. Journal of Food Protection 76, 1829-1837

  10. Hirneisen, K. A., Sharma, M., & Kniel, K. E. (2012). Human enteric pathogen internalization by root uptake into food crops. Foodborne Pathogens and Disease, 9(5), 396-405

  11. Fett, W. F. (2000) Naturally occurring biofilms on alfalfa and other types of sprouts. J Food Prot 63, 625-632

  12. Morris, C.E. and Monier, J.M. (2003) The ecological significance of biofilm formation by plant-associated bacteria. Ann Rev Phytopath 41, 429-453

  13. An, S.Q., Potnis, N., Dow, M., Vorhölter, F.J., He, Y.Q., Becker, A., Teper, D., Li, Y., Wang, N., Bleris, L., Tang, J.L., 2019. Mechanistic insights into host adaptation, virulence and epidemiology of the phytopathogen Xanthomonas. FEMS Microbiology Reviews, 44(1), 1-32

  14. Goldman, R.P., Travisano, M., 2011. Experimental evolution of ultraviolet radiation resistance in Escherichia coli. Evolution, 65(12), 3486-2498

  15. Truchado, P., M. I. Gil, M. Moreno-Candel, and A. Allende. (2019). Impact of weather conditions, leaf age and irrigation water disinfection on the major epiphytic bacterial genera of baby spinach grown in an open field. Food Microbiology. 78:46-52

  16. Belias, A. M., A. Sbodio, P. Truchado, D. Weller, J. Pinzon, M. Skots, A. Allende, D. Munther, T. Suslow, M. Wiedmann, and R. Ivanek. (2020). Effect of Weather on the Die-Off of Escherichia coli and Attenuated Salmonella enterica Serovar Typhimurium on Preharvest Leafy Greens following Irrigation with Contaminated Water. Applied and Environmental Microbiology. 86. 1-25

  17. Elasri, M.O. and Miller, R.V. (1999) Study of the response of a biofilm bacterial community to UV radiation. Appl Environ Microbiol 65, 2025-2031

  18. Crozier, L., Hedley, P.E., Morris, J., Wagstaff, C., Andrews, S.C., Toth, I., Jackson, R.W. and Holden, N.J. (2016) Whole-transcriptome analysis of verocytotoxigenic Escherichia coli O157:H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce lxtracts. Frontiers in Microbiology 7

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